SCREENSHOTS:

CNV Workshop

APP DESCRIPTION:

Download this app named CNV Workshop.

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74

Features

• Compute CNV calls using a high-quality published algorithm, on or off a cluster
• Publish/view CNV calls via a sophisticated web application
• Visualize your CNVs in GBrowse and UCSC genome browser
• Support multiple labs/groups via user and group membership
• Download in XLS, CSV, XML, BED, and PDF format
• View GAD phenotype, DGV CNV, and gene annotation
• Compare your CNVs against the CHOP normals data set (healthy controls)
• View hyperdiploidy/LOH reports
• Link out to FABLE, Entrez, Entrez Gene, GAD, DGV, UCSC

Audience

Advanced End Users, Developers, Healthcare Industry, Information Technology, Science/Research

Programming Language

Perl

Database Environment

JDBC, MySQL, Perl DBI/DBD

Free download Web app or web tool CNV Workshop from RedcoolMedia.net